PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00017100-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family Trihelix
Protein Properties Length: 674aa    MW: 76141.8 Da    PI: 6.7832
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00017100-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix48.32.7e-15116171262
            trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkryk 62 
                         Wt++ev aL+++r++me+++ +       We+vs+k++e gf+rs+ +Ckek+e+ ++++ 
  WALNUT_00017100-RA 116 WTNEEVIALLRIRSSMENWFPEF-----TWEHVSRKLAELGFKRSAAKCKEKFEEESRYFN 171
                         ********************998.....9****************************9997 PP

2trihelix97.89.6e-31512598186
            trihelix   1 rWtkqevlaLiearremeerlrrgk..lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                         rW+++evlaLi++r ++ +++++++  +k+plWe++s+ m e g++rs+k+Ckekwen+nk+++k+k+ +kkr s +s+tcpyf+ql 
  WALNUT_00017100-RA 512 RWPRDEVLALINLRCSLYNNVEDKElgAKGPLWERISQGMLELGYKRSAKRCKEKWENINKYFRKTKDVNKKR-SLDSRTCPYFHQLS 598
                         8*********************9865599*******************************************8.9999********95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM0071720112169IPR001005SANT/Myb domain
PfamPF138375.3E-10114183No hitNo description
PROSITE profilePS500906.319116167IPR017877Myb-like domain
CDDcd122034.13E-14116171No hitNo description
SMARTSM007170.15509573IPR001005SANT/Myb domain
CDDcd122034.31E-26511578No hitNo description
PfamPF138375.2E-19511598No hitNo description
PROSITE profilePS500906.586512571IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0001158Molecular Functionenhancer sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
Sequence ? help Back to Top
Protein Sequence    Length: 674 aa     Download sequence    Send to blast
MFDGVPDQFH HFIASSRTTL PLPLSFPLHA AAAAAASNPS QNITFPPYDH YEPPPPNSHH  60
HQAALALHPN LLQPLHHQSP THKDHEEKEE NNLVSVNLDI ERERSIQVQQ PIDPAWTNEE  120
VIALLRIRSS MENWFPEFTW EHVSRKLAEL GFKRSAAKCK EKFEEESRYF NSNINYGKSY  180
RFFSEPEELY HGNQNPDDHV GTEKNGQKME KPSHDQGSQE DHNLGQSLEA DHSREGDHSR  240
DGTVGEHFKD IGTETVAGKA KRKKRKRKKF EMLKGLCEKI VSKMMAQQEE MHHKLLEDLA  300
KRDEEKVAKE EAWKKQEMDR MNRELEIMSH EQAIAGDRQA TIIEFLKQIA SSSFGSQYFN  360
EERHDIQADS LKVTKSSNSY PPSTNSSSLI QAPNPNPASD INNQNTVEAP QLSFAMDHQG  420
HHNFSSLSTK GNSITPTSIT KTLARHQNPS LNTLAPNTPE VPTSTSPTLP LSSQNRNSPN  480
TQNMPLTPIS TSTHKDSPNS IANIVKDDLG KRWPRDEVLA LINLRCSLYN NVEDKELGAK  540
GPLWERISQG MLELGYKRSA KRCKEKWENI NKYFRKTKDV NKKRSLDSRT CPYFHQLSTL  600
YNQGTLVIAP SEGPENHLIS SSTTTAPENH LPLPDIGLNN SSQGMSSGLN STLLQVAEGE  660
KNMVQAQSFD FELI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1260268KRKKRKRKK
2261266RKKRKR
3262267KKRKRK
4262268KKRKRKK
5264268RKRKK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00011PBMTransfer from AT5G28300Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002319635.10.0hypothetical protein POPTR_0013s03670g
TrEMBLB9I5E10.0B9I5E1_POPTR; Uncharacterized protein
STRINGPOPTR_0013s03670.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF50433355
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28300.14e-43Trihelix family protein